Skip to content

Commit 3ca0d59

Browse files
colin-combecolin-combe
authored
Merge pull request #156 from colin-combe/master
new nucleic acid interactor types
2 parents 2716ab4 + 990edbe commit 3ca0d59

8 files changed

Lines changed: 3113 additions & 11 deletions

File tree

‎data/EBI-25570228.json‎

Lines changed: 947 additions & 0 deletions
Large diffs are not rendered by default.

‎data/EBI-25816865.json‎

Lines changed: 277 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,277 @@
1+
{
2+
"data": [
3+
{
4+
"object": "interactor",
5+
"id": "uniprotkb_P0DTD1-PRO_0000449630",
6+
"sequence": "AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTFEKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPSARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLTRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRNVATLQ",
7+
"type": {
8+
"id": "MI:0326",
9+
"name": "protein"
10+
},
11+
"organism": {
12+
"taxid": "2697049",
13+
"common": "SARS-CoV-2",
14+
"scientific": "SARS-CoV-2"
15+
},
16+
"identifier": {
17+
"db": "uniprotkb",
18+
"id": "P0DTD1-PRO_0000449630"
19+
},
20+
"label": "p0dtd1-pro_0000449630"
21+
},
22+
{
23+
"object": "interactor",
24+
"id": "intact_EBI-25816901",
25+
"sequence": "CGCGUAGCAUGCUACGUCAUUCUCCUAAGAAGCUA",
26+
"type": {
27+
"id": "IA:2966",
28+
"name": "double stranded ribonucleic acid"
29+
},
30+
"organism": {
31+
"taxid": "32630",
32+
"common": "synthetic construct",
33+
"scientific": "synthetic construct"
34+
},
35+
"identifier": {
36+
"db": "intact",
37+
"id": "EBI-25816901"
38+
},
39+
"label": "product-rna"
40+
},
41+
{
42+
"object": "interactor",
43+
"id": "intact_EBI-25816965",
44+
"sequence": "CUAUCCCCAUGUGAUUUUAAUAGCUUCUUAGGAGAAUGACGUAGCAUGCUACGCG",
45+
"type": {
46+
"id": "MI:0318",
47+
"name": "nucleic acid"
48+
},
49+
"organism": {
50+
"taxid": "32630",
51+
"common": "synthetic construct",
52+
"scientific": "synthetic construct"
53+
},
54+
"identifier": {
55+
"db": "intact",
56+
"id": "EBI-25816965"
57+
},
58+
"label": "template-rna"
59+
},
60+
{
61+
"object": "interactor",
62+
"id": "complex portal_CPX-5742",
63+
"type": {
64+
"id": "MI:1302",
65+
"name": "stable complex"
66+
},
67+
"organism": {
68+
"taxid": "2697049",
69+
"common": "SARS-CoV-2",
70+
"scientific": "SARS-CoV-2"
71+
},
72+
"identifier": {
73+
"db": "complex portal",
74+
"id": "CPX-5742"
75+
},
76+
"label": "nsp7-nsp8-nsp12_sars2"
77+
},
78+
{
79+
"object": "interaction",
80+
"id": "intact_EBI-25816865",
81+
"interactionType": {
82+
"id": "MI:0915",
83+
"name": "physical association"
84+
},
85+
"experiment": {
86+
"detmethod": {
87+
"id": "MI:0410",
88+
"name": "3D electron microscopy"
89+
},
90+
"host": {
91+
"taxid": "-1",
92+
"common": "in vitro",
93+
"scientific": "In vitro"
94+
},
95+
"pubid": [
96+
{
97+
"db": "intact",
98+
"id": "EBI-25815170"
99+
},
100+
{
101+
"db": "pubmed",
102+
"id": "32676607"
103+
},
104+
{
105+
"db": "imex",
106+
"id": "IM-28291"
107+
}
108+
],
109+
"sourceDatabase": {
110+
"id": "MI:0469",
111+
"name": "European Bioinformatics Institute"
112+
},
113+
"figures": [
114+
"Table S1"
115+
]
116+
},
117+
"identifiers": [
118+
{
119+
"db": "intact",
120+
"id": "EBI-25816865"
121+
},
122+
{
123+
"db": "wwpdb",
124+
"id": "6XEZ"
125+
},
126+
{
127+
"db": "emdb",
128+
"id": "EMD-22160"
129+
},
130+
{
131+
"db": "imex",
132+
"id": "IM-28291-1"
133+
}
134+
],
135+
"participants": [
136+
{
137+
"id": "1",
138+
"interactorRef": "uniprotkb_P0DTD1-PRO_0000449630",
139+
"stoichiometry": "2",
140+
"bioRole": {
141+
"id": "MI:0499",
142+
"name": "unspecified role"
143+
},
144+
"expRole": {
145+
"id": "MI:0497",
146+
"name": "neutral component"
147+
},
148+
"identificationMethods": [
149+
{
150+
"id": "MI:2287",
151+
"name": "identification by structure determination"
152+
}
153+
],
154+
"expressedIn": {
155+
"taxid": "83333",
156+
"common": "ecoli",
157+
"scientific": "Escherichia coli (strain K12)"
158+
}
159+
},
160+
{
161+
"id": "2",
162+
"interactorRef": "intact_EBI-25816901",
163+
"stoichiometry": "1",
164+
"bioRole": {
165+
"id": "MI:0499",
166+
"name": "unspecified role"
167+
},
168+
"expRole": {
169+
"id": "MI:0497",
170+
"name": "neutral component"
171+
},
172+
"identificationMethods": [
173+
{
174+
"id": "MI:2287",
175+
"name": "identification by structure determination"
176+
}
177+
],
178+
"expressedIn": {
179+
"taxid": "32630",
180+
"common": "synthetic construct",
181+
"scientific": "synthetic construct"
182+
},
183+
"features": [
184+
{
185+
"id": "3",
186+
"name": "whole molecule",
187+
"category": "bindingSites",
188+
"type": {
189+
"id": "MI:0442",
190+
"name": "sufficient binding region"
191+
},
192+
"sequenceData": [
193+
{
194+
"pos": "?-?",
195+
"interactorRef": "intact_EBI-25816901",
196+
"participantRef": "2"
197+
}
198+
],
199+
"linkedFeatures": [
200+
"4"
201+
]
202+
}
203+
]
204+
},
205+
{
206+
"id": "5",
207+
"interactorRef": "intact_EBI-25816965",
208+
"stoichiometry": "1",
209+
"bioRole": {
210+
"id": "MI:0499",
211+
"name": "unspecified role"
212+
},
213+
"expRole": {
214+
"id": "MI:0497",
215+
"name": "neutral component"
216+
},
217+
"identificationMethods": [
218+
{
219+
"id": "MI:2287",
220+
"name": "identification by structure determination"
221+
}
222+
],
223+
"expressedIn": {
224+
"taxid": "32630",
225+
"common": "synthetic construct",
226+
"scientific": "synthetic construct"
227+
},
228+
"features": [
229+
{
230+
"id": "4",
231+
"name": "whole molecule",
232+
"category": "bindingSites",
233+
"type": {
234+
"id": "MI:0442",
235+
"name": "sufficient binding region"
236+
},
237+
"sequenceData": [
238+
{
239+
"pos": "?-?",
240+
"interactorRef": "intact_EBI-25816901",
241+
"participantRef": "2"
242+
}
243+
],
244+
"linkedFeatures": [
245+
"3"
246+
]
247+
}
248+
]
249+
},
250+
{
251+
"id": "6",
252+
"interactorRef": "complex portal_CPX-5742",
253+
"stoichiometry": "1",
254+
"bioRole": {
255+
"id": "MI:0499",
256+
"name": "unspecified role"
257+
},
258+
"expRole": {
259+
"id": "MI:0497",
260+
"name": "neutral component"
261+
},
262+
"identificationMethods": [
263+
{
264+
"id": "MI:2287",
265+
"name": "identification by structure determination"
266+
}
267+
],
268+
"expressedIn": {
269+
"taxid": "83333",
270+
"common": "ecoli",
271+
"scientific": "Escherichia coli (strain K12)"
272+
}
273+
}
274+
]
275+
}
276+
]
277+
}

0 commit comments

Comments
 (0)