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Description
I have been using this tool the last month following exactly the code on the github with no problems )actually, pretty happy with the results!), but today it just stop working, and I am not sure why. Has anything changed in this two weeks? I am quite new to R, so perhaps this is an easy question I am missing.
Thanks!
This is the code I used:
library(CyteTypeR)
prepped_data <- PrepareCyteTypeR(
merged_object_seg_noMT,
markers_all,
n_top_genes = 10,
group_key = 'SCT.Polygons_snn_res.0.75',
aggregate_metadata = TRUE,
coordinates_key = "umap"
)
metadata <- list(
title = 'My visium HD analysis of human tissue',
run_label = 'initial_analysis_resolution_0_75',
experiment_name = 'xxxx_VisiumHD'
)
results <- CyteTypeR(
- obj=merged_object_seg_noMT,
- prepped_data = prepped_data,
- study_context = "portal vein samples from humans liver donors and explanted cirrhotic livers",
- metadata = metadata
- )
INFO [2025-12-17 10:48:17] Submitting job to CyteType...
An error occurred: los argumentos no fueron usados (req_prep, resend_count = n)
Error en CyteTypeR(obj = merged_object_seg_noMT, prepped_data = prepped_data, :
Job submission failed.