Hi, thanks for providing us with the tool for phylogenomic analysis.
I am trying to use panphlan to do strain-level analysis on a species which here has more than 2,000 genomes (including metagenomic assembly genomes). Since the step of generating pangenome database takes a lot of time and the species has been analylized with roary for pangenome, is there any way to import the roary pangenome results into panphlan? Thanks!