cleanup: CLI simplify pass, correctness fixes, core dedups, scan split, docs sync (−587 net lines) #349

Job	Run time
coverage	10m 19s
test (windows-latest)	26m 15s
dispatch-tests	10s
test (macos-latest)	12m 30s
clippy	48s
test (ubuntu-latest)	11m 45s
lint-ecosystems	6s
setup-matrix (golang)	3m 0s
coverage-docker (maven)	6m 24s
test-release	26m 15s
setup-matrix (gem)	3m 8s
setup-matrix (maven)	4m 15s
setup-matrix (nuget)	3m 27s
setup-matrix (composer)	3m 17s
coverage-docker (composer)	5m 18s
setup-matrix (deno)	3m 7s
coverage-docker (npm)	5m 57s
coverage-docker (pypi)	5m 33s
coverage-docker (gem)	5m 33s
coverage-docker (cargo)	5m 36s
coverage-docker (golang)	5m 24s
coverage-docker (nuget)	5m 49s
e2e-docker (nuget)	4m 16s
e2e-docker (maven)	4m 30s
e2e-docker (pypi)	4m 35s
e2e-docker (npm)	4m 23s
coverage-docker (deno)	5m 46s
e2e-docker (deno)	4m 15s
setup-matrix (npm)	4m 17s
e2e-docker (composer)	4m 21s
e2e-docker (cargo)	4m 17s
e2e-docker (gem)	4m 17s
setup-matrix (cargo)	3m 13s
e2e-docker (golang)	4m 25s
setup-matrix (pypi)	4m 56s
coverage-merge	22s
e2e (ubuntu-latest, e2e_vendor_gem_build)	1m 35s
e2e (ubuntu-latest, e2e_nuget)	1m 40s
e2e (ubuntu-latest, e2e_vendor_composer_build)	1m 38s
e2e (ubuntu-latest, e2e_maven)	1m 33s
e2e (ubuntu-latest, e2e_golang)	1m 41s
e2e (ubuntu-latest, e2e_safety_pnpm)	1m 45s
e2e (ubuntu-latest, e2e_cargo)	1m 33s
e2e (macos-latest, e2e_safety_cargo_build)	1m 47s
e2e (macos-latest, e2e_safety_pnpm)	1m 43s
e2e (ubuntu-latest, e2e_composer)	1m 34s
e2e (ubuntu-latest, e2e_safety_cargo_build)	1m 37s
e2e (windows-latest, e2e_safety_pnpm)	3m 51s
e2e (windows-latest, e2e_safety_cargo_build)	3m 49s
	3h 57m 35s

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