cleanup: CLI simplify pass, correctness fixes, core dedups, scan split, docs sync (−587 net lines) #353

Job	Run time
lint-ecosystems	7s
coverage	10m 28s
test (ubuntu-latest)	11m 40s
test (windows-latest)	17m 42s
dispatch-tests	12s
test-release	26m 22s
test (macos-latest)	12m 33s
e2e-docker (golang)	4m 7s
e2e-docker (cargo)	4m 22s
e2e-docker (deno)	4m 18s
coverage-docker (npm)	5m 32s
clippy	54s
coverage-docker (gem)	4m 45s
setup-matrix (maven)	3m 49s
e2e-docker (maven)	4m 15s
e2e-docker (nuget)	4m 21s
setup-matrix (npm)	3m 53s
setup-matrix (pypi)	4m 27s
setup-matrix (deno)	3m 10s
setup-matrix (gem)	3m 19s
setup-matrix (nuget)	3m 19s
setup-matrix (cargo)	3m 13s
coverage-docker (maven)	5m 44s
setup-matrix (composer)	3m 12s
e2e-docker (gem)	4m 35s
setup-matrix (golang)	2m 51s
coverage-docker (cargo)	5m 7s
coverage-docker (composer)	5m 15s
coverage-docker (golang)	4m 22s
coverage-docker (deno)	5m 16s
coverage-docker (pypi)	5m 38s
e2e-docker (pypi)	4m 38s
e2e-docker (npm)	4m 39s
coverage-docker (nuget)	5m 45s
e2e-docker (composer)	4m 24s
coverage-merge	22s
e2e (ubuntu-latest, e2e_composer)	1m 20s
e2e (ubuntu-latest, e2e_cargo)	1m 34s
e2e (macos-latest, e2e_safety_cargo_build)	1m 31s
e2e (ubuntu-latest, e2e_golang)	1m 37s
e2e (ubuntu-latest, e2e_maven)	1m 35s
e2e (macos-latest, e2e_safety_pnpm)	2m 39s
e2e (ubuntu-latest, e2e_nuget)	1m 36s
e2e (ubuntu-latest, e2e_vendor_gem_build)	1m 41s
e2e (windows-latest, e2e_safety_pnpm)	3m 53s
e2e (ubuntu-latest, e2e_safety_cargo_build)	1m 33s
e2e (ubuntu-latest, e2e_vendor_composer_build)	1m 41s
e2e (ubuntu-latest, e2e_safety_pnpm)	1m 45s
e2e (windows-latest, e2e_safety_cargo_build)	3m 33s
	3h 44m 34s

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