When converting 2D tiff images within a directory the filenames must follow a specific naming structure so z-slices and channels are recognized correctly in the napari viewer. From my understanding the channel name must be the value after the first underscore, and the z-slice order of a channel is determined by the sort function. I didn't see the documentation explaining this so it may be useful to make this more apparent.
When converting 2D tiff images within a directory the filenames must follow a specific naming structure so z-slices and channels are recognized correctly in the napari viewer. From my understanding the channel name must be the value after the first underscore, and the z-slice order of a channel is determined by the sort function. I didn't see the documentation explaining this so it may be useful to make this more apparent.