[PROJECT] Port the IronTract Challenge to DANDI

[ayendiki]

Upload IronTract Challenge data and implement challenge functionality on DANDI. The data and steps involved in the challenge are described in Maffei et al., 2022.

Tasks:

• Convert Bruker DWI data to BIDS
• Create dandiset with public DWIs and private ground truth tracing
• Create public notebook that generates or reads tractogram and computes ROC curve by comparing tractogram to ground truth tracing

[ayendiki]

At @satra 's suggestion, it was decided to use a new github repo for submitting new entries and use actions for evaluating the entries against the ground truth that is stored in a private dandiset. I'll be cooking this here: https://github.com/lincbrain/irontract-challenge

[kabilar]

Hi @ayendiki, I created two Dandisets (one public and one embargoed) for this data. Let me know if you would like me to convert the data to BIDS and upload it. Thanks.

• Public - https://dandiarchive.org/dandiset/001289
• Embargoed - https://dandiarchive.org/dandiset/001288

[calvinchai]

Hi @ayendiki, I created two Dandisets (one public and one embargoed) for this data. Let me know if you would like me to convert the data to BIDS and upload it. Thanks.

* Public - https://dandiarchive.org/dandiset/001289

* Embargoed - https://dandiarchive.org/dandiset/001288

Hi Kabi, could you please upload the data and add Anastasia and me as owner? Thanks!

[kabilar]

Hi Kabi, could you please upload the data and add Anastasia and me as owner? Thanks!

Hi @calvinchai, happy to help. It looks like Anastasia added you as an owner. And since your message, Anastasia and/or you have uploaded some data. Is there other data to convert and upload? Having looked through https://irontract.mgh.harvard.edu, I am not sure where to find it. Thanks.

[ayendiki]

We're all set now, thank you!

…

________________________________ From: Kabilar Gunalan ***@***.***> Sent: Friday, January 10, 2025 11:22 AM To: brainhack-boston/brainhack-boston.github.io ***@***.***> Cc: Anastasia Yendiki ***@***.***>; Mention ***@***.***> Subject: Re: [brainhack-boston/brainhack-boston.github.io] [PROJECT] Port the IronTract Challenge to DANDI (Issue #46) External Email - Use Caution Hi Kabi, could you please upload the data and add Anastasia and me as owner? Thanks! Hi @calvinchai<https://secure-web.cisco.com/1UiZE0IgKQBR088plL-l0Gai40aX-VEguGp2xs2_Rbc6nm0XJDU1t1OhqLrpiSrgJ6jsx88WRDwLafGexVAN1fbf-N4jH9_Jo2H6A3Dz5QRz1o3kQYZM0pThMcbxfCFhxq-nEjrzUhKsk-kgBn1vons_Eywdxf3GHJNB8ANni9x1t9MKWAIIo6SWecB20GIn8sGzVwUKCuNhRJ4grJgoJfaz4Sfs_uqaEhMyYGEqgdhP7q0fjxOCbLxYWGaWQeIda08GQihmzjv6np3IXRVR1YGqkjeNhIpdk5mCpPQ3-PqKpMNvInILwtwq34X-l3bS5/https%3A%2F%2Fgithub.com%2Fcalvinchai>, happy to help. It looks like Anastasia added you as an owner. And since your message, Anastasia and/or you have uploaded some data. Is there other data to convert and upload? Having looked through MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://irontract.mgh.harvard.edu<https://secure-web.cisco.com/1Pzf8DIAj_mJTAwOOKS3kFDwNpf5Rdh-cE-oS0n2EYhAZGJXYyhQJ3s5TNwAllr7H523xn3IQNJIFnAOXa7x_px64iBkQqBeUJW5LOOOwYdBP0jurKibX4n8GjK4HvK0GNipAQArbq09cVvINJaKwKJiyU43SW-aNdUIMAkvqrozcSUZnz2mIxHkpCWQTO8XGDw1IkXw7FRaUBjNOnP9ak04MhWnM-fdGM1gYW7Lb8hieFv-c-wdSICvUoBts_epnmSTNoIW0oYpX_wa8yF3UUmUKqqUy0tTsSVgucbz-HmSYkSm6xfug7Qn-ZxSUYY8P/https%3A%2F%2Firontract.mgh.harvard.edu>, I am not sure where to find it. Thanks. — Reply to this email directly, view it on GitHub<https://secure-web.cisco.com/12HQubvB6-aow8VKw3vF9D2jWlfDn9PwCm0yI1ropGoLdtlO-qXHEOuOuiLN7xyXp_ziH39yU4loTKMfrUj13djPUjNIGdJx5t9vEcXIta6oFJRFvSv2-_zgCy4GVvkTGjc3cZf4tDpwTUTHJyDVyTTmyiT0OjJhNSDX2J8hZBQUy-dRnCnNBNqnwYX5Dh5euXAOifoYYzMwmNzbYZ2zfCreBVPqgdfN1N-CSOojor9tW2lOdYxf22CvMzhwZB2NHXVUmdD2VCQubmo-6J85-lJG8mz_mw71YDyx5KiwiaY5xvL2SAQ18ekwQLQ0XsYR4/https%3A%2F%2Fgithub.com%2Fbrainhack-boston%2Fbrainhack-boston.github.io%2Fissues%2F46%23issuecomment-2583150531>, or unsubscribe<https://secure-web.cisco.com/115FT9tysmlG3TMTkCDKE-pdHNP9QMo_y8F8Htj2Z6pb4csKVOiLcCGeOHsGY9d7h7DgsUctLaS1GxZFeZgO6QGolPXtEw59Ta_1p9ZRiyrpS9pB_tTh73-dMlYawSdTfLCkrY59MO19Z-SnzLhLizJK_r1R1_8f21D5U0CeEeATPbBKgVLh_rw0Vadlur2V1sFa2rBTcmtnRLq7yWVSFrmTtn1O-l-kDtLzd06cKQciaAR4MyLDzoI54uFesFiFCzd6TPuLNVSAXTLCDbfMqTJ4HL4LnFIvFtIlKI-5apuW_rvot4x9PqsP0TdfKHfw7/https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FADU34V2FUXELGA2YF6TRXJ32J7XTFAVCNFSM6AAAAABUYDY3WCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDKOBTGE2TANJTGE>. You are receiving this because you were mentioned.Message ID: ***@***.***> [ { ***@***.***": "http://schema.org", ***@***.***": "EmailMessage", "potentialAction": { ***@***.***": "ViewAction", "target": "#46 (comment)", "url": "#46 (comment)", "name": "View Issue" }, "description": "View this Issue on GitHub", "publisher": { ***@***.***": "Organization", "name": "GitHub", "url": "https://github.com" } } ] The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.