Python package

fix: make `submodule.update()` after `submodule.deinit()` work #2567

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Run time

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Job	Run time
test (ubuntu, 3.7)	2m 19s
test (ubuntu, 3.8)	2m 24s
test (ubuntu, 3.13)	2m 18s
test (ubuntu, 3.10)	2m 30s
test (ubuntu, 3.9)	2m 52s
test (ubuntu, 3.13t)	7m 59s
test (macos, 3.9)	3m 29s
test (ubuntu, 3.11)	2m 42s
test (macos, 3.12)	2m 7s
test (windows, 3.12)	6m 1s
test (ubuntu, 3.14t)	2m 3s
test (windows, 3.7)	6m 13s
test (ubuntu, 3.14)	1m 54s
test (macos, 3.11)	3m 37s
test (macos, 3.10)	3m 37s
test (macos, 3.13)	2m 9s
test (windows, 3.11)	6m 17s
test (windows, 3.10)	7m 15s
test (windows, 3.9)	6m 16s
test (ubuntu, 3.12)	2m 31s
test (macos, 3.8)	2m 49s
test (macos, 3.14)	2m 25s
test (windows, 3.8)	6m 41s
	1h 28m 28s