security: GitHub token exposed in .git/config of cloned repositories

[myakove]

Summary

When the server clones repositories, it embeds the GitHub token directly in the clone URL, leaving it exposed in .git/config of every cloned repo.

Problem / Motivation

The current cloning mechanism embeds the GitHub token directly in the clone URL:

clone_url_with_token = clone_url.replace("https://", f"https://{github_token}@")
git clone {clone_url_with_token} {clone_repo_dir}

This means .git/config in every cloned repo contains the raw token:

[remote "origin"]
    url = https://ghp_abc123token@github.com/org/repo.git

Risk

Any process that runs inside the cloned repository with filesystem access can read .git/config and extract the token. This includes:

• AI CLI tools (Claude, Gemini, Cursor) running with permissive flags
• Custom check run commands
• Tox/pre-commit executions
• Any code in the repository itself during builds

With AI features that grant filesystem access (--dangerously-skip-permissions, --yolo, --force), a malicious PR author could craft content that tricks the AI into reading and exfiltrating the token via prompt injection.

Requirements

1. Remove GitHub token from .git/config after cloning
2. Use a secure credential delivery mechanism for subsequent git operations
3. Ensure all existing clone/fetch/push operations continue to work

Suggested Solutions

1. Git credential helper — Use git credential store or git credential cache instead of embedding tokens in URLs
2. Remove token from config after clone — Run git remote set-url origin <clean-url> after cloning, use token only for fetch/push via env vars
3. SSH URLs — Use SSH keys instead of HTTPS tokens
4. GIT_ASKPASS — Use a script that provides the token via GIT_ASKPASS environment variable

Deliverables

• Code changes to remove token from .git/config
• Implement secure credential delivery mechanism
• Add/update tests
• Update CLAUDE.md (if architectural patterns change)

Notes

This is a pre-existing architectural issue affecting all operations that run in cloned repos, not specific to any single feature. The scope covers all clone operations in webhook_server/libs/github_api.py.