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‎.github/workflows/docker/buildwheel.sh‎

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‎.github/workflows/docker/shared.env‎

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‎.github/workflows/wheels.yml‎

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@@ -1,237 +1,41 @@
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name: Build and test wheels
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name: Publish Python release
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on:
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push:
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branches:
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- main
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- test
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tags:
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- '*'
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branches: [test-publish]
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release:
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types: [published]
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env:
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FORCE_COLOR: 1
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jobs:
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OSX:
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runs-on: macos-latest
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strategy:
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fail-fast: false
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matrix:
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python: [3.11, 3.12, 3.13, 3.14]
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steps:
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- name: Checkout
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uses: actions/checkout@v6.0.2
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- name: Set up Python ${{ matrix.python }}
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uses: actions/setup-python@v6.1.0
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with:
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python-version: ${{ matrix.python }}
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- name: Install deps
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run: |
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pip install build
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- name: Build Wheel
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run: |
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cd python
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python -m build --wheel --config-setting=--plat-name=macosx_10_9_universal2
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- name: Delocate to bundle dynamic libs
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run: |
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cd python
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pip install delocate
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delocate-wheel -v dist/*.whl
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- name: Upload Wheels
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uses: actions/upload-artifact@v6.0.0
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with:
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name: osx-wheel-${{ matrix.python }}
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path: python/dist
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build-wheels:
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uses: tskit-dev/.github/.github/workflows/build-wheels.yml@main
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with:
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pyproject-directory: python
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windows:
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runs-on: windows-latest
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strategy:
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fail-fast: false
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matrix:
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python: [3.11, 3.12, 3.13, 3.14]
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wordsize: [64]
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steps:
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- name: Checkout
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uses: actions/checkout@v6.0.2
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- name: Install deps
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env:
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PYTHON: "py -${{ matrix.python }}-${{ matrix.wordsize }}"
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shell: bash
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run: |
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set -ex
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${PYTHON} -m pip install build
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- name: Build Wheel
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env:
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PYTHON: "py -${{ matrix.python }}-${{ matrix.wordsize }}"
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shell: bash
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run: |
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set -ex
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git reset --hard
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cd python
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${PYTHON} -VV
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# For some reason I can't work out the C compiler is not following symlinks
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rm -r lib
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mkdir lib
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cp -r --dereference ../c/subprojects lib/.
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cp -r --dereference ../c/tskit lib/.
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cp ../c/tskit.h lib/.
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${PYTHON} -m build --wheel
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- name: Upload Wheels
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uses: actions/upload-artifact@v6.0.0
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with:
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name: win-wheel-${{ matrix.python }}-${{ matrix.wordsize }}
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path: python/dist
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manylinux:
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runs-on: ubuntu-24.04
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steps:
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- name: Checkout
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uses: actions/checkout@v6.0.2
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- name: Set up Python 3.11
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uses: actions/setup-python@v6.1.0
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with:
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python-version: 3.11
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- name: Build sdist
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shell: bash
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run: |
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cd python
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python -m pip install build
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python -m build --sdist
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- name: Upload sdist
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uses: actions/upload-artifact@v6.0.0
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with:
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name: sdist
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path: python/dist
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- name: Build wheels in docker
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shell: bash
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run: |
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docker run --rm -v `pwd`:/project -w /project quay.io/pypa/manylinux2014_x86_64 bash .github/workflows/docker/buildwheel.sh
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- name: Upload Wheels
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uses: actions/upload-artifact@v6.0.0
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with:
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name: linux-wheels
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path: python/dist/wheelhouse
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OSX-test:
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needs: ['OSX']
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strategy:
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fail-fast: false
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matrix:
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python: [3.11, 3.12, 3.13, 3.14]
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runner: [macos-15, macos-15-intel]
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include:
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- runner: macos-15
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arch: arm64
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- runner: macos-15-intel
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arch: x86_64
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runs-on: ${{ matrix.runner }}
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steps:
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- name: Download wheels
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uses: actions/download-artifact@v7.0.0
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with:
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name: osx-wheel-${{ matrix.python }}
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- name: Set up Python ${{ matrix.python }}
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uses: actions/setup-python@v6.1.0
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with:
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python-version: ${{ matrix.python }}
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- name: Verify architecture
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run: |
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arch_name=$(uname -m)
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echo "Running on architecture: $arch_name"
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if [[ "$arch_name" != "${{ matrix.arch }}" ]]; then
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echo "Error: Expected ${{ matrix.arch }} but got $arch_name"
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exit 1
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fi
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- name: Install wheel and test
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run: |
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python -VV
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# Install the local wheel
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pip install ./tskit-*.whl
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python -c "import tskit; import platform; print(f'Running on {platform.machine()} architecture')"
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windows-test:
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needs: ['windows']
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runs-on: windows-latest
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strategy:
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fail-fast: false
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matrix:
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python: [3.11, 3.12, 3.13, 3.14]
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wordsize: [64]
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steps:
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- name: Download wheels
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uses: actions/download-artifact@v7.0.0
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with:
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name: win-wheel-${{ matrix.python }}-${{ matrix.wordsize }}
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- name: Set up Python ${{ matrix.python }}
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uses: actions/setup-python@v6.1.0
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with:
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python-version: ${{ matrix.python }}
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- name: Install wheel and test
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shell: bash
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run: |
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python -VV
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# Install the local wheel
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python -m pip install *.whl
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python -c "import tskit"
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manylinux-test:
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runs-on: ubuntu-24.04
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needs: ['manylinux']
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strategy:
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fail-fast: false
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matrix:
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python: [3.11, 3.12, 3.13, 3.14]
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include:
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- python: 3.11
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wheel: cp311
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- python: 3.12
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wheel: cp312
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- python: 3.13
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wheel: cp313
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- python: 3.14
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wheel: cp314
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steps:
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- name: Download wheels
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uses: actions/download-artifact@v7.0.0
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with:
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name: linux-wheels
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- name: Set up Python
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uses: actions/setup-python@v6.1.0
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with:
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python-version: ${{ matrix.python }}
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- name: Install wheel and test
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run: |
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python -VV
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# Install the local wheel
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pip install ./tskit-*-${{ matrix.wheel }}-*.whl
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python -c "import tskit"
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PyPI_Upload:
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publish:
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runs-on: ubuntu-24.04
21917
environment: release
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needs: ['windows-test', 'OSX-test', 'manylinux-test']
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needs: [ 'build-wheels' ]
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permissions:
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id-token: write
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steps:
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- name: Download all
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- name: Download artifacts
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uses: actions/download-artifact@v7.0.0
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- name: Move to dist
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run: |
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mkdir dist
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cp */*.{whl,gz} dist/.
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with:
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pattern: build-*
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path: dist
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merge-multiple: true
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- name: Show artifacts
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run: ls -lah dist
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- name: Publish distribution to Test PyPI
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if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags') && !contains(github.event.ref, 'C_')
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if: github.event_name == 'push' && github.ref_name == 'test-publish'
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uses: pypa/gh-action-pypi-publish@v1.13.0
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with:
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repository_url: https://test.pypi.org/legacy/
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- name: Publish distribution to PRODUCTION PyPI
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if: github.event_name == 'release' && !startsWith(github.event.release.tag_name, 'C_')
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repository-url: https://test.pypi.org/legacy/
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verbose: true
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- name: Publish distribution to Production PyPI
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if: github.event_name == 'release'
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uses: pypa/gh-action-pypi-publish@v1.13.0

‎python/pyproject.toml‎

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Original file line numberDiff line numberDiff line change
@@ -94,6 +94,11 @@ docs = [
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"pandas",
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]
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wheels = [
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"cibuildwheel",
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]
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# Fully pin lint requirements for determinism.
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lint = [
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"clang-format==21.1.8",
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"numpy",
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"pytest",
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]
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[tool.cibuildwheel]
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build = ["cp311-*", "cp312-*", "cp313-*", "cp314-*"]
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build-frontend = "build"
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build-verbosity = 1
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test-command = [
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"python -c \"import _tskit\"",
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"tskit --help",
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]
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[tool.cibuildwheel.linux]
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archs = ["x86_64"]

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