Issues

• score_mutant stuck in the "Quantize the structure" phase

  ai4protein/ProSST#16 · Filter by author ldx022 opened on Oct 30, 2025

• Possible bug in DisentangledSelfAttention?

  ai4protein/ProSST#15 · Filter by author rcalef opened on Sep 3, 2025

• SSTPredictor stopped when I use it to generate embedding for the structures from pdb file.

  ai4protein/ProSST#14 · Filter by author XudongZhang-ny opened on Jul 2, 2025
  2

• PdbQuantizer stuck

  ai4protein/ProSST#13 · Filter by author Riccarn opened on Apr 7, 2025
  1

• Discrepancy in structure quantizer outputs and request for original PDB files used in the proteingym_benchmark.zip

  ai4protein/ProSST#12 · Filter by author yangguang8112 opened on Mar 17, 2025
  2

• Error in score_mutant.ipynb

  ai4protein/ProSST#11 · Filter by author MichaelAbel1 opened on Mar 4, 2025
  4

• PdbQuantizer is too slow

  ai4protein/ProSST#9 · Filter by author yourh opened on Jan 19, 2025
  2

• Extract embeddings

  ai4protein/ProSST#8 · Filter by author Zmmhd opened on Dec 31, 2024

• Issues when create environment

  ai4protein/ProSST#5 · Filter by author U12458 opened on Oct 26, 2024
  1

• Thank you for the work you have done. This question pertains to downstream tasks.

  ai4protein/ProSST#4 · Filter by author lllastronaut opened on Sep 5, 2024
  5

• Structural tokenizer (PdbQuantizer) is too slow at processing long proteins

  ai4protein/ProSST#3 · Filter by author KatarinaYuan opened on Aug 15, 2024
  9

• Is the MLP and training script available in the future?

  ai4protein/ProSST#2 · Filter by author JiahaoZhang-Public opened on Jun 21, 2024
  1

• How to use with sequence-only dataset

  ai4protein/ProSST#1 · Filter by author thanhtvt opened on Jun 4, 2024
  2