pipeline

Some useful pipelines for UM cluster

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Repository files navigation

pipeline

About

Uh oh!

Releases

Packages

Uh oh!

Contributors

Uh oh!

Languages

Name		Name	Last commit message	Last commit date
Latest commit History 94 Commits
trf_scripts		trf_scripts
README.md		README.md
generate_bwamem_mapping_pipeline.pl		generate_bwamem_mapping_pipeline.pl
generate_freebayes_calling_pipeline_makefile.pl		generate_freebayes_calling_pipeline_makefile.pl
generate_gatk_haplotypecaller_calling_pipeline_makefile.pl		generate_gatk_haplotypecaller_calling_pipeline_makefile.pl
generate_gatk_unifiedgenotyper_calling_pipeline_makefile.pl		generate_gatk_unifiedgenotyper_calling_pipeline_makefile.pl
generate_gatk_vqsr_pipeline_makefile.pl		generate_gatk_vqsr_pipeline_makefile.pl
generate_lobstr_calling_pipeline_makefile.pl		generate_lobstr_calling_pipeline_makefile.pl
generate_mapping_pipeline.pl		generate_mapping_pipeline.pl
generate_platypus_calling_pipeline_makefile.pl		generate_platypus_calling_pipeline_makefile.pl
generate_samtools_calling_pipeline_makefile.pl		generate_samtools_calling_pipeline_makefile.pl
generate_scalpel_calling_pipeline_makefile.pl		generate_scalpel_calling_pipeline_makefile.pl
generate_trf_calling_pipeline_makefile.pl		generate_trf_calling_pipeline_makefile.pl
generate_variant_evaluation_pipeline_makefile.pl		generate_variant_evaluation_pipeline_makefile.pl
generate_vt2_calling_makefile.pl		generate_vt2_calling_makefile.pl
generate_vt2_genotyping_makefile.pl		generate_vt2_genotyping_makefile.pl
generate_vt_calling_makefile.pl		generate_vt_calling_makefile.pl
generate_vt_calling_makefile.py		generate_vt_calling_makefile.py
generate_vt_compute_features_makefile.pl		generate_vt_compute_features_makefile.pl
generate_vt_genotyping_makefile.pl		generate_vt_genotyping_makefile.pl
generate_vt_topmed_freeze2_calling_makefile.pl		generate_vt_topmed_freeze2_calling_makefile.pl
generate_vt_topmed_freeze3_calling_makefile.pl		generate_vt_topmed_freeze3_calling_makefile.pl
generate_vt_v0.01_calling_makefile.pl		generate_vt_v0.01_calling_makefile.pl
run.sh		run.sh

Folders and files

Latest commit

History

Repository files navigation

pipeline

About

Resources

Uh oh!

Stars

Watchers

Forks

Releases

Packages 0

Uh oh!

Contributors

Uh oh!

Languages

Packages