Repositories list

• forecasts-ncov-states

  Public
  SARS-CoV-2 variant growth rates and frequency forecasts for US states

  Python

  •33 forks in seattleflu/forecasts-ncov-states•00 stars in seattleflu/forecasts-ncov-states•00 issues in seattleflu/forecasts-ncov-states•22 pull requests in seattleflu/forecasts-ncov-states•Updated Feb 27, 2025Feb 27, 2025

• id3c-customizations

  Public

  seattleflu/id3c-customizations’s past year of commit activity
  Extensions of ID3C for the Seattle Flu Study

  id3cseattle-flu-studyscan-study

  id3cseattle-flu-studyscan-study

  PLpgSQL

  •

  MIT License

  •00 forks in seattleflu/id3c-customizations•33 stars in seattleflu/id3c-customizations•33 issues in seattleflu/id3c-customizations•22 pull requests in seattleflu/id3c-customizations•Updated Feb 4, 2025Feb 4, 2025

• assembly

  Public

  seattleflu/assembly’s past year of commit activity
  Pipelines for assembling NGS data from Seattle flu study.

  Python

  •99 forks in seattleflu/assembly•88 stars in seattleflu/assembly•00 issues in seattleflu/assembly•00 pull requests in seattleflu/assembly•Updated Jul 12, 2024Jul 12, 2024

• slack-exporter

  Public
  A Slack bot for exporting content from public and private channels.

  Python

  •

  GNU General Public License v3.0

  •4949 forks in seattleflu/slack-exporter•00 stars in seattleflu/slack-exporter•00 issues in seattleflu/slack-exporter•00 pull requests in seattleflu/slack-exporter•Updated Apr 2, 2024Apr 2, 2024

• id3c

  Public

  seattleflu/id3c’s past year of commit activity
  Data logistics system enabling real-time pathogen surveillance. Built for the Seattle Flu Study.

  pythonclipostgres+ 13

  pythonclipostgressqletlrest-apipostgresqlfhirplpgsqlsqitch+ 6

  PLpgSQL

  •

  MIT License

  •55 forks in seattleflu/id3c•2222 stars in seattleflu/id3c•00 issues in seattleflu/id3c•1111 pull requests in seattleflu/id3c•Updated Dec 6, 2023Dec 6, 2023

• switchboard

  Public archive
  A REDCap record switchboard for the SFS kit unboxing team.

  sqlitemakedatasette+ 1

  sqlitemakedatasettescan-study

  Python

  •

  MIT License

  •00 forks in seattleflu/switchboard•22 stars in seattleflu/switchboard•00 issues in seattleflu/switchboard•22 pull requests in seattleflu/switchboard•Updated Nov 27, 2023Nov 27, 2023

• documentation

  Public

  seattleflu/documentation’s past year of commit activity
  Internal platform documentation

  wikiid3cseattle-flu-study+ 1

  wikiid3cseattle-flu-studyscan-study

  Python

  •11 fork in seattleflu/documentation•11 star in seattleflu/documentation•00 issues in seattleflu/documentation•00 pull requests in seattleflu/documentation•Updated Jul 21, 2023Jul 21, 2023

• incidence-mapper

  Public
  R interface to database, map model training, and model data API Server

  HTML

  •

  MIT License

  •11 fork in seattleflu/incidence-mapper•44 stars in seattleflu/incidence-mapper•4646 issues in seattleflu/incidence-mapper•22 pull requests in seattleflu/incidence-mapper•Updated Dec 26, 2022Dec 26, 2022

• infra

  Public

  seattleflu/infra’s past year of commit activity
  Work-in-progress Ansible setup for Seattle Flu Study infrastructure.

  Shell

  •00 forks in seattleflu/infra•00 stars in seattleflu/infra•00 issues in seattleflu/infra•33 pull requests in seattleflu/infra•Updated Nov 18, 2022Nov 18, 2022

• husky-musher

  Public
  A redirecting service for the Husky Coronavirus Testing study

  Python

  •22 forks in seattleflu/husky-musher•22 stars in seattleflu/husky-musher•00 issues in seattleflu/husky-musher•11 pull request in seattleflu/husky-musher•Updated Sep 15, 2022Sep 15, 2022

• lab-result-reports

  Public archive
  Tools for generating lab test result reports as PDFs

  dockerlatexseattle-flu-study+ 1

  dockerlatexseattle-flu-studyscan-study

  TeX

  •

  MIT License

  •11 fork in seattleflu/lab-result-reports•22 stars in seattleflu/lab-result-reports•00 issues in seattleflu/lab-result-reports•00 pull requests in seattleflu/lab-result-reports•Updated Aug 10, 2022Aug 10, 2022

• geocoding

  Public
  Geocoding addresses into census tracts

  Python

  •00 forks in seattleflu/geocoding•00 stars in seattleflu/geocoding•00 issues in seattleflu/geocoding•00 pull requests in seattleflu/geocoding•Updated Aug 4, 2022Aug 4, 2022

• augur-build

  Public
  the (in development) augur build for understanding influenza dynamics in Seattle

  Python

  •3434 forks in seattleflu/augur-build•00 stars in seattleflu/augur-build•33 issues in seattleflu/augur-build•00 pull requests in seattleflu/augur-build•Updated Jul 9, 2021Jul 9, 2021

• hct-autumn-2020

  Public
  University-wide COVID-19 Testing Program Methods and Autumn 2020 Results

  00 forks in seattleflu/hct-autumn-2020•00 stars in seattleflu/hct-autumn-2020•00 issues in seattleflu/hct-autumn-2020•00 pull requests in seattleflu/hct-autumn-2020•Updated Jan 28, 2021Jan 28, 2021

• heatmap

  Public
  Simple heatmap display of sample locations

  Python

  •00 forks in seattleflu/heatmap•00 stars in seattleflu/heatmap•00 issues in seattleflu/heatmap•00 pull requests in seattleflu/heatmap•Updated Oct 3, 2020Oct 3, 2020

• website-y3

  Public archive
  A simple, static website for SFS Year 3

  HTML

  •00 forks in seattleflu/website-y3•00 stars in seattleflu/website-y3•00 issues in seattleflu/website-y3•00 pull requests in seattleflu/website-y3•Updated Sep 23, 2020Sep 23, 2020

• Lab-Labels

  Public
  Quickly generate PDFs for printing cryo-safe labels

  TeX

  •

  Other

  •11 fork in seattleflu/Lab-Labels•00 stars in seattleflu/Lab-Labels•00 issues in seattleflu/Lab-Labels•00 pull requests in seattleflu/Lab-Labels•Updated Sep 2, 2020Sep 2, 2020

• genomic-incidence-tracker

  Public archive

  seattleflu/genomic-incidence-tracker’s past year of commit activity
  JavaScript

  •

  GNU Affero General Public License v3.0

  •00 forks in seattleflu/genomic-incidence-tracker•00 stars in seattleflu/genomic-incidence-tracker•77 issues in seattleflu/genomic-incidence-tracker•33 pull requests in seattleflu/genomic-incidence-tracker•Updated Aug 20, 2020Aug 20, 2020

• sqlite-utils

  Public
  Python CLI utility and library for manipulating SQLite databases

  Python

  •

  Apache License 2.0

  •212212 forks in seattleflu/sqlite-utils•00 stars in seattleflu/sqlite-utils•00 issues in seattleflu/sqlite-utils•00 pull requests in seattleflu/sqlite-utils•Updated Jul 8, 2020Jul 8, 2020

• covid19-early-detection

  Public
  00 forks in seattleflu/covid19-early-detection•11 star in seattleflu/covid19-early-detection•00 issues in seattleflu/covid19-early-detection•00 pull requests in seattleflu/covid19-early-detection•Updated May 27, 2020May 27, 2020

• lisless

  Public
  A LIS that does less, for the LIS-less.

  Python

  •22 forks in seattleflu/lisless•11 star in seattleflu/lisless•00 issues in seattleflu/lisless•00 pull requests in seattleflu/lisless•Updated Feb 27, 2020Feb 27, 2020

• seattle-geojson

  Public
  A collection of Seattle maps based on different administrative divisions

  R

  •55 forks in seattleflu/seattle-geojson•44 stars in seattleflu/seattle-geojson•44 issues in seattleflu/seattle-geojson•00 pull requests in seattleflu/seattle-geojson•Updated Dec 7, 2019Dec 7, 2019

• simulated-data

  Public
  Simulated Seattle Flu Study data for developing visualization, analysis, and modeling tools.

  R

  •00 forks in seattleflu/simulated-data•00 stars in seattleflu/simulated-data•11 issue in seattleflu/simulated-data•00 pull requests in seattleflu/simulated-data•Updated May 13, 2019May 13, 2019

• seattle-flu-js-prototype

  Public
  This repo contains prototypes and visualization sketches for the Web-based Seattle Flu platform

  JavaScript

  •00 forks in seattleflu/seattle-flu-js-prototype•00 stars in seattleflu/seattle-flu-js-prototype•00 issues in seattleflu/seattle-flu-js-prototype•00 pull requests in seattleflu/seattle-flu-js-prototype•Updated Mar 17, 2019Mar 17, 2019