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seung-lab

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  1. connected-components-3d connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    C++ 450 48

  2. euclidean-distance-transform-3d euclidean-distance-transform-3d Public

    Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

    C++ 264 42

  3. kimimaro kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    C++ 200 30

  4. cloud-volume cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    Python 171 54

  5. DracoPy DracoPy Public

    Python wrapper for Google's Draco mesh compression library.

    C++ 118 31

  6. znn-release znn-release Public archive

    Multi-core CPU implementation of deep learning for 2D and 3D sliding window convolutional networks (ConvNets).

    C++ 94 32

Repositories

Showing 10 of 187 repositories
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    seung-lab/neuroglancer’s past year of commit activity
    TypeScript 25 Apache-2.0 378 91 37 Updated Apr 17, 2026
  • cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    seung-lab/cloud-volume’s past year of commit activity
    Python 171 BSD-3-Clause 54 84 8 Updated Apr 17, 2026
  • seuron Public Forked from wongwill86/air-tasks

    SEUnglab neuRON pipeline

    seung-lab/seuron’s past year of commit activity
    Python 7 MIT 7 1 (1 issue needs help) 2 Updated Apr 17, 2026
  • vqsort Public

    Sort arrays with SIMD vqsort in Python

    seung-lab/vqsort’s past year of commit activity
    Python 1 BSD-3-Clause 0 0 0 Updated Apr 15, 2026
  • fastremap Public

    Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.

    seung-lab/fastremap’s past year of commit activity
    C++ 65 LGPL-3.0 9 4 1 Updated Apr 15, 2026
  • connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    seung-lab/connected-components-3d’s past year of commit activity
    C++ 450 LGPL-3.0 48 15 4 Updated Apr 13, 2026
  • ng-extend Public
    seung-lab/ng-extend’s past year of commit activity
    Vue 5 8 3 27 Updated Apr 9, 2026
  • ngl_bench Public

    Manipulating neuroglancer and unraveling connectomes is an agentic problem.

    seung-lab/ngl_bench’s past year of commit activity
    Python 0 1 0 0 Updated Mar 23, 2026
  • KVDbClient Public

    generic key-value database client

    seung-lab/KVDbClient’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 21, 2026
  • cloud-files Public

    Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.

    seung-lab/cloud-files’s past year of commit activity
    Python 44 BSD-3-Clause 10 15 0 Updated Mar 20, 2026

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