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chore(deps-dev): update snakemake requirement from ^8.20.1 to >=8.20.1,<10.0.0#30

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chore(deps-dev): update snakemake requirement from ^8.20.1 to >=8.20.1,<10.0.0#30
dependabot[bot] wants to merge 1 commit intomainfrom
dependabot/pip/snakemake-gte-8.20.1-and-lt-10.0.0

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@dependabot dependabot Bot commented on behalf of github Apr 27, 2026

Updates the requirements on snakemake to permit the latest version.

Release notes

Sourced from snakemake's releases.

v9.19.0

9.19.0 (2026-03-28)

Features

  • clean up profile handling, switch to profile.yaml as default file name, allow specifying yaml file instead of dir (#4087) (2f34008)

Bug Fixes

  • avoid race conditions in wrapper/script/notebook retrieval; better error messages for missing wrappers; introduction of DAGProcessorBase for modularization of DAG processing code (for now in the same module to avoid conflicts with open PRs) (#4133) (15468be)

Documentation

Changelog

Sourced from snakemake's changelog.

9.19.0 (2026-03-28)

Features

  • clean up profile handling, switch to profile.yaml as default file name, allow specifying yaml file instead of dir (#4087) (2f34008)

Bug Fixes

  • avoid race conditions in wrapper/script/notebook retrieval; better error messages for missing wrappers; introduction of DAGProcessorBase for modularization of DAG processing code (for now in the same module to avoid conflicts with open PRs) (#4133) (15468be)

Documentation

9.18.2 (2026-03-26)

Bug Fixes

9.18.1 (2026-03-25)

Bug Fixes

  • add pip dependency to publish task (ea2b5c9)

9.18.0 (2026-03-25)

Features

  • use checksums reported by storage plugins for between workflow caching (#4098) (2ed2c23)

9.17.3 (2026-03-24)

Bug Fixes

  • add curl when containerize with wrapper (#4115) (44979e4)
  • ensure proper wrapper prefix is passed to CWL and shown in wrapper error messages (#4121) (11b6f29)
  • ensure that strings that purely contain integers or floats (e.g. "42") remain strings when parsing profiles (#4119) (3ca08e1)
  • incorrect highlighting in HTML report (#4120) (1ef224d)

Documentation

... (truncated)

Commits
  • f40c2af chore(main): release 9.19.0 (#4135)
  • 15468be fix: avoid race conditions in wrapper/script/notebook retrieval; better error...
  • bfb6b59 docs: update installation instuctions (#4025)
  • 2f34008 feat: clean up profile handling, switch to profile.yaml as default file nam...
  • 3c58c1b chore(main): release 9.18.2 (#4132)
  • ac5ad20 fix: remove debug code
  • ccc159c chore(main): release 9.18.1 (#4131)
  • ea2b5c9 fix: add pip dependency to publish task
  • b916140 chore(main): release 9.18.0 (#4130)
  • 2ed2c23 feat: use checksums reported by storage plugins for between workflow caching ...
  • Additional commits viewable in compare view

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Updates the requirements on [snakemake](https://github.com/snakemake/snakemake) to permit the latest version.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](snakemake/snakemake@v8.20.1...v9.19.0)

---
updated-dependencies:
- dependency-name: snakemake
  dependency-version: 9.19.0
  dependency-type: direct:development
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added dependencies Pull requests that update a dependency file python Pull requests that update python code labels Apr 27, 2026
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