TotalSegmentator 2D: A Tool for Rapid Anatomical Structure Analysis
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Updated
Sep 5, 2025 - Python
TotalSegmentator 2D: A Tool for Rapid Anatomical Structure Analysis
Computes CT contrast phase and GI tract contrast using TotalSegmentator and ML
Swift Horos/OsiriX plugin that exports active CT/MR series, provisions an isolated Python TotalSegmentator environment, runs segmentation, and imports RT-Struct overlays back into the host viewer.
Automated analysis of lumbar discs, integrating TotalSegmentator for anatomical localization, PyRadiomics for quantitative feature extraction, and machine learning models for clinical classification (Pfirrmann grading).
Automated CT pelvimetry and body composition analysis
Automatic identification of CT contrast subphases. The final pipeline was developed during the master thesis project "Two-Stage CT Subphase Classification Using OrganLevel Features" (El-Zein, Nora, 2026)
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